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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105129963_105132479_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105129963 - 105132479
Intron Length:
2517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCATGTTAAAT
Flanking Amino Acid:
LGVLRSKEKVIDIEINGDAV
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
73.3
37.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84
0.76
0.7
79.5
26.1
Minor 5ss
34.6
-1.7
2.8
39.6
39.8
Minor BPS
48.1
-0
2.1
67.78
42.9

Associated Gene:

Gene:
LPIN2
Ensembl Gene ID:
ENSAPLG00000012547
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040091
105104185 - 105138313
34129
ENSAPLT00000022459
105104185 - 105147684
43500
ENSAPLT00000013150
105105089 - 105138313
33225