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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105132681_105147428_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
105132681 - 105147428
Intron Length:
14748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AAAACTTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
32.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81.1
0.7
0.7
81
24.2
Minor 5ss
38
-1.4
3.4
55
49.2
Minor BPS
66.5
0.6
1.2
73.41
37.2

Associated Gene:

Gene:
LPIN2
Ensembl Gene ID:
ENSAPLG00000012547
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022459
105104185 - 105147684
43500