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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1051375_1067330_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1051375 - 1067330
Intron Length:
15956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCTTCTACA
Flanking Amino Acid:
HLKAKVPKVHDGFCLPEWDG
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
81.7
31.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.6
0.87
0.6
83.7
24.6
Minor 5ss
33.7
-1.9
3.4
49.9
46.4
Minor BPS
56.6
0.2
1.9
71.34
40.8

Associated Gene:

Gene:
PTH1R
Ensembl Gene ID:
ENSAPLG00000005598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005825
991927 - 1103775
111849