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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105154169_105155405_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105154169 - 105155405
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTAAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCCTAAATC
Flanking Amino Acid:
SKQHKEGEKKDFIKPHVDEI
Intron Amino Acid Position:
1704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.4
0.41
1
67.8
36.6
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
70.6
0.63
1.6
77.77
38.8

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103