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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105158599_105163470_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105158599 - 105163470
Intron Length:
4872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGA
5'SS Class:
major
3'SS Sequence:
CTTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTACATATAATC
Flanking Amino Acid:
PDVVTIQEGKALNLSCTVWG
Intron Amino Acid Position:
1584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.1
41.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
88.2
0.86
0.6
85
22.6
Minor 5ss
34.4
-1.8
3.5
47.2
48.2
Minor BPS
48.9
-0.1
1.7
62.88
36.1

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103