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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105168319_105169056_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105168319 - 105169056
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAGCC
5'SS Class:
major
3'SS Sequence:
TTTGTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGGAT
U12 Branch Point Sequence:
TTTGTTTCCACA
Flanking Amino Acid:
DTSELKLTDTAFADLMNEVC
Intron Amino Acid Position:
1442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.3
68.7
37.5
Major BPS
63.6
0.34
1.4
63.4
44.3
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
27.1
-2.6
3.1
34.4
41.3
Minor BPS
47.7
-0.1
2
66.33
40.9

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103