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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105170938_105171197_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105170938 - 105171197
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAATA
5'SS Class:
major
3'SS Sequence:
TAATTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATCTGTAATT
Flanking Amino Acid:
FQRKEWHRKQGPHFVDKLGW
Intron Amino Acid Position:
1352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
78.8
29.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.7
0.4
1.1
63.5
41.6
Minor 5ss
31.7
-2.1
3
40.3
45.4
Minor BPS
60.5
0.41
2
78.82
37.8

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103