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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105172024_105173037_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105172024 - 105173037
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTCCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TATCTGTTAACT
Flanking Amino Acid:
FNDKEIFNGEKYKMKVDQKT
Intron Amino Acid Position:
1284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
67.5
0.39
1
67.7
32.6
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
62.4
0.47
2.1
82.35
38.7

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103