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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105173175_105176725_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105173175 - 105176725
Intron Length:
3551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ATATACTTCATT
Flanking Amino Acid:
VSSSYTIDEEAVPLVSELAV
Intron Amino Acid Position:
1140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
82
0.72
0.7
77.5
30.5
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
56.4
0.28
1.9
76.35
40.2

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103