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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105178043_105183392_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105178043 - 105183392
Intron Length:
5350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTAG
5'SS Class:
major
3'SS Sequence:
TCTGATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTTCTGATCT
Flanking Amino Acid:
TDPVVAETRPGTKEVVVDVD
Intron Amino Acid Position:
1135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.7
38.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.8
0.69
0.9
77.2
36.8
Minor 5ss
42
-0.9
2.5
49.5
46.8
Minor BPS
61.3
0.43
1.7
80.35
41.6

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103