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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105189950_105191746_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105189950 - 105191746
Intron Length:
1797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGAT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TATTCCTTCATT
Flanking Amino Acid:
PCNNNPVKGTRFICHGLTNG
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
74.9
34.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.4
0.59
0.9
73.5
41.9
Minor 5ss
31
-2.2
3.6
46.5
48.8
Minor BPS
74.5
0.85
1.7
89.11
35.7

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103