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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105193168_105194656_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105193168 - 105194656
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCG
5'SS Class:
major
3'SS Sequence:
TCTGTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TGTTTCAAAAGT
Flanking Amino Acid:
HEGIMYFVEKCVAGTEEWQR
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
62.4
42.2
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
82.3
0.73
0.9
76.3
37.7
Minor 5ss
31.6
-2.1
3.1
40
45.5
Minor BPS
47.9
-0
2.2
72.99
43.8

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103