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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105196881_105199153_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105196881 - 105199153
Intron Length:
2273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCAAG
5'SS Class:
major
3'SS Sequence:
TTGTATGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CTGTTTGTATGT
Flanking Amino Acid:
GNPIIGYFIDRCEVGTTHWT
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
68.8
43.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
80
0.67
1
77.1
41.6
Minor 5ss
34.1
-1.8
2.7
39.7
45.9
Minor BPS
40.7
-0.6
2.3
57.83
46.1

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011290
105154011 - 105230113
76103
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103