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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105202617_105203154_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105202617 - 105203154
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTAC
5'SS Class:
major
3'SS Sequence:
CTCTAATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AATTCTCTAATT
Flanking Amino Acid:
FKPDIEWYRNGVLITPSKWV
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.2
34.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.5
0.55
0.9
65.9
39.6
Minor 5ss
38.8
-1.3
3
46.6
43.5
Minor BPS
65.5
0.56
1.6
80.37
35.2

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103