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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105205176_105206150_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105205176 - 105206150
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGGGAA
5'SS Class:
major
3'SS Sequence:
TCTCTAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTTCTCTAATT
Flanking Amino Acid:
RYGLHSLEISTCDFDDTAQY
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
69.3
37.4
Major BPS
80
0.75
1
78.6
31
Major PPT
77.1
0.61
0.8
74.8
33.6
Minor 5ss
29.9
-2.3
3.5
36.4
41.5
Minor BPS
70.5
0.72
1.6
87
32.2

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103