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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105209908_105211599_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105209908 - 105211599
Intron Length:
1692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAAGAA
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CGATGATGAATT
Flanking Amino Acid:
SAERVALKKTLEETQAFHKK
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
65
34.7
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
88.5
0.87
0.7
80.8
36.8
Minor 5ss
29.6
-2.3
3.4
38.4
46.7
Minor BPS
44.3
-0.3
2.1
59.73
43.4

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011290
105154011 - 105230113
76103
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103