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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105211811_105217175_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105211811 - 105217175
Intron Length:
5365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTCCA
5'SS Class:
major
3'SS Sequence:
CACCTTCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTACAC
Flanking Amino Acid:
IDYSVPIFTGREVGVSGITD
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
64.6
41.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.6
0.67
0.8
76.4
31.8
Minor 5ss
41.1
-1
2.7
51.6
44.8
Minor BPS
49.4
-0
1.9
65.77
39.3

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044170
105154011 - 105230113
76103
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103