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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105226123_105229587_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
105226123 - 105229587
Intron Length:
3465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGATCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATGTTTGATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.3
0.75
0.9
80.9
36.4
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
58
0.23
1.7
69.63
36.5

Associated Gene:

Gene:
MYOM1
Ensembl Gene ID:
ENSAPLG00000010648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018810
105154011 - 105230113
76103
ENSAPLT00000011290
105154011 - 105230113
76103
ENSAPLT00000044170
105154011 - 105230113
76103