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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105308479_105309544_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
105308479 - 105309544
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTGCC
5'SS Class:
major
3'SS Sequence:
CGGTTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCACTGAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
66.4
40.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.9
0.52
0.9
70.1
40.4
Minor 5ss
38.4
-1.3
3.3
53.8
43.4
Minor BPS
64.7
0.54
1.6
83.92
36.3

Associated Gene:

Gene:
TGIF1
Ensembl Gene ID:
ENSAPLG00000010541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025944
105307959 - 105316767
8809