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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105427831_105427869_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
105427831 - 105427869
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GGGTGGCAGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AGTAACAAAATG
Flanking Amino Acid:
TTVRTIQSSTGKVPFCVAPS
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
44.1
-0.3
1.2
33.5
40.3
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
40.9
-0.8
2
45.58
40.4

Associated Gene:

Gene:
DLGAP1
Ensembl Gene ID:
ENSAPLG00000010212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010657
105427790 - 105478017
50228