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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105463363_105463404_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
105463363 - 105463404
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATGGAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCATCAA
U12 Branch Point Sequence:
CAGTCATCAAGA
Flanking Amino Acid:
QPSLTELTTLKYIFFSYFFL
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
66.5
0.41
1.1
68.2
37.5
Major PPT
47.1
-0.1
1.7
53.1
40.7
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
45.2
-0.3
2.1
53.91
44.2

Associated Gene:

Gene:
DLGAP1
Ensembl Gene ID:
ENSAPLG00000010212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010657
105427790 - 105478017
50228