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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105478090_105591053_R

Intron Information:

Intron Rank:
136344
Intron Class:
major
Intron Phase:
Intron Coordinates:
105478090 - 105591053
Intron Length:
112964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTGTATTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.2
0.77
0.7
80.7
31
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
49
0
1.9
67.86
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020762
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041600
105478038 - 105636698
158661