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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105591165_105636500_R

Intron Information:

Intron Rank:
136345
Intron Class:
major
Intron Phase:
Intron Coordinates:
105591165 - 105636500
Intron Length:
45336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTGC
5'SS Class:
strong_major
3'SS Sequence:
GATTATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTAGTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75.6
35.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.3
0.57
1
70.9
43.7
Minor 5ss
39.9
-1.1
2.9
53
44.2
Minor BPS
66.6
0.6
1.4
76.8
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020762
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041600
105478038 - 105636698
158661