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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105636598_105745768_R

Intron Information:

Intron Rank:
136346
Intron Class:
major
Intron Phase:
Intron Coordinates:
105636598 - 105745768
Intron Length:
109171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.7
0.76
0.8
82.4
34
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020762
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045746
105636414 - 105745772
109359