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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105770251_105771562_R

Intron Information:

Intron Rank:
155321
Intron Class:
major
Intron Phase:
Intron Coordinates:
105770251 - 105771562
Intron Length:
1312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
100
1.24
0.5
100
0
Major PPT
70.5
0.46
1
68.2
42.1
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031050
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035005
105761523 - 105771730
10208