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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105792158_105793508_R

Intron Information:

Intron Rank:
133783
Intron Class:
major
Intron Phase:
Intron Coordinates:
105792158 - 105793508
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTCTCTACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTTCTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
65.3
39.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83
0.74
0.8
78
29.2
Minor 5ss
35.6
-1.6
3.3
49.5
41.3
Minor BPS
65.8
0.58
1.9
88.18
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019224
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040882
105791989 - 105796426
4438
ENSAPLT00000035698
105791989 - 105793746
1758