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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105793421_105793508_R

Intron Information:

Intron Rank:
133781
Intron Class:
major
Intron Phase:
Intron Coordinates:
105793421 - 105793508
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
CCTTTAAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGCCCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
65.3
39.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73
0.52
1
67.1
37.2
Minor 5ss
35.6
-1.6
3.3
49.5
41.3
Minor BPS
65
0.55
1.4
75.53
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019224
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023066
105793385 - 105796426
3042