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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105857523_105857732_F

Intron Information:

Intron Rank:
139233
Intron Class:
major
Intron Phase:
Intron Coordinates:
105857523 - 105857732
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCACAATATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTCATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
65.8
0.36
1
58.9
40.7
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
60.7
0.33
1.7
73.3
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024952
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041858
105857513 - 105861838
4326
ENSAPLT00000027458
105857513 - 105858659
1147