Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

105952245 - 105953511

Intron Length:

1267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGGA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATTAA

U12 Branch Point Sequence:

AAGTAATTAACT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

75.2

35.1

Major BPS

67.7

0.44

58.3

38.4

Major PPT

85.6

0.8

0.7

80.7

24.6

Minor 5ss

29.8

-2.3

3.3

38.8

46.3

Minor BPS

58.5

0.34

1.8

74.4

41.5

Associated Gene:

Gene:

EPB41L3

Ensembl Gene ID:

ENSAPLG00000012505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021826

105952076 - 106043456

91381

ENSAPLT00000027803

105952076 - 106043456

91381

ENSAPLT00000020980

105952076 - 106043456

91381

ENSAPLT00000026115

105952076 - 106043456

91381

ENSAPLT00000035631

105952076 - 106016065

63990

ENSAPLT00000013080

105952076 - 106016065

63990

ENSAPLT00000023647

105952076 - 106083776

131701

ENSAPLT00000032749

105952076 - 106042563

90488

ENSAPLT00000021933

105952076 - 106043456

91381

ENSAPLT00000032459

105952076 - 106043456

91381

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105952245_105953511_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: