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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105956945_105960037_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105956945 - 105960037
Intron Length:
3093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTTTCTCTACA
Flanking Amino Acid:
KGGTTFLEMQRIDTTTSQET
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
89.2
0.88
0.6
84.1
24.1
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
56.8
0.21
1.9
71.02
41

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021933
105952076 - 106043456
91381