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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105957573_105960037_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105957573 - 105960037
Intron Length:
2465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTGTGTATGACT
Flanking Amino Acid:
KGGTTFLEMQTKQSTGEKTL
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
78.3
0.64
0.9
77.7
36.7
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
47.2
-0.1
2.1
67.25
44.2

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032459
105952076 - 106043456
91381
ENSAPLT00000021826
105952076 - 106043456
91381
ENSAPLT00000020980
105952076 - 106043456
91381