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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105957573_105963502_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105957573 - 105963502
Intron Length:
5930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGCTCG
5'SS Class:
major
3'SS Sequence:
TTTGTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTGTGTATGACT
Flanking Amino Acid:
PMIEPLVPEETKQSTGEKTL
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.3
63.3
43.9
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
78.3
0.64
0.9
77.7
36.7
Minor 5ss
39.6
-1.2
2.8
48.5
47.2
Minor BPS
47.2
-0.1
2.1
67.25
44.2

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027803
105952076 - 106043456
91381