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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105960113_105963502_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
105960113 - 105963502
Intron Length:
3390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGCTCG
5'SS Class:
major
3'SS Sequence:
CCCCTGACATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTACTAAAACC
Flanking Amino Acid:
PMIEPLVPEETKEEREKSEK
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.3
63.3
43.9
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
57.5
0.17
0.9
55.4
33.7
Minor 5ss
39.6
-1.2
2.8
48.5
47.2
Minor BPS
52.7
0.07
2
71.92
39.2

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021826
105952076 - 106043456
91381
ENSAPLT00000032749
105952076 - 106042563
90488
ENSAPLT00000020980
105952076 - 106043456
91381
ENSAPLT00000032459
105952076 - 106043456
91381
ENSAPLT00000026115
105952076 - 106043456
91381
ENSAPLT00000021933
105952076 - 106043456
91381
ENSAPLT00000035631
105952076 - 106016065
63990