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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105963695_105964174_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
105963695 - 105964174
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
TAAAACTATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTCTTTTAAAA
Flanking Amino Acid:
YVKHSNLMLEDLDKTQEDLM
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
58.2
0.19
1
48.5
44.3
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
64.9
0.46
1.3
72.15
33

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021826
105952076 - 106043456
91381
ENSAPLT00000020980
105952076 - 106043456
91381
ENSAPLT00000032749
105952076 - 106042563
90488
ENSAPLT00000027803
105952076 - 106043456
91381
ENSAPLT00000026115
105952076 - 106043456
91381