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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105963695_105964407_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
105963695 - 105964407
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TAAAACTATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTCTTTTAAAA
Flanking Amino Acid:
QEEDGDLKAQDLDKTQEDLM
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
58.2
0.19
1
48.5
44.3
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
64.9
0.46
1.3
72.15
33

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032459
105952076 - 106043456
91381