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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105964241_105964407_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105964241 - 105964407
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCACTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTCCCTTACCT
Flanking Amino Acid:
QEEDGDLKAQNSLIKRIQGE
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.1
0.74
0.8
80.7
31
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
71.8
0.76
1.6
86.57
38.9

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026115
105952076 - 106043456
91381
ENSAPLT00000021826
105952076 - 106043456
91381
ENSAPLT00000020980
105952076 - 106043456
91381
ENSAPLT00000027803
105952076 - 106043456
91381