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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105964444_105966329_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105964444 - 105966329
Intron Length:
1886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
CTCATGCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTCTCAAAT
Flanking Amino Acid:
AADGETTATESDQEEDGDLK
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
74.5
35.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
65.9
0.36
1.1
61
40.1
Minor 5ss
38.5
-1.3
2.3
44.3
43
Minor BPS
66.9
0.61
1.6
83.97
36.2

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021826
105952076 - 106043456
91381
ENSAPLT00000020980
105952076 - 106043456
91381
ENSAPLT00000032459
105952076 - 106043456
91381
ENSAPLT00000027803
105952076 - 106043456
91381
ENSAPLT00000026115
105952076 - 106043456
91381