About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105966384_105970540_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
105966384 - 105970540
Intron Length:
4157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTAACAAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
ACTTGTCTAACA
Flanking Amino Acid:
NDLSDSSEEETDSEQTDTAA
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.6
31.9
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
54.5
0.1
1
49
38
Minor 5ss
37.6
-1.4
2.6
46
42.3
Minor BPS
49.9
-0
2.1
65.95
40.8

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026115
105952076 - 106043456
91381
ENSAPLT00000021826
105952076 - 106043456
91381
ENSAPLT00000032459
105952076 - 106043456
91381
ENSAPLT00000027803
105952076 - 106043456
91381