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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105974660_105977216_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105974660 - 105977216
Intron Length:
2557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGTCC
5'SS Class:
major
3'SS Sequence:
GTGTCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATGAAGG
Flanking Amino Acid:
RYTMSRSLDGEVGTGQYATT
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.5
39
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
72.5
0.51
1
65.8
40.9
Minor 5ss
37.6
-1.4
3.2
43.1
44.2
Minor BPS
46.2
-0.4
2.1
56
44.4

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032459
105952076 - 106043456
91381
ENSAPLT00000027803
105952076 - 106043456
91381
ENSAPLT00000023647
105952076 - 106083776
131701
ENSAPLT00000035631
105952076 - 106016065
63990
ENSAPLT00000021933
105952076 - 106043456
91381
ENSAPLT00000032749
105952076 - 106042563
90488