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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105974714_105977216_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105974714 - 105977216
Intron Length:
2503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGTCC
5'SS Class:
major
3'SS Sequence:
TATTTGCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CCCTCTTTAAAT
Flanking Amino Acid:
RYTMSRSLDGASVNENHEIY
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.5
39
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.4
0.68
0.8
78.1
36
Minor 5ss
37.6
-1.4
3.2
43.1
44.2
Minor BPS
65.2
0.56
1.5
72.3
45

Associated Gene:

Gene:
EPB41L3
Ensembl Gene ID:
ENSAPLG00000012505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021826
105952076 - 106043456
91381
ENSAPLT00000020980
105952076 - 106043456
91381
ENSAPLT00000013080
105952076 - 106016065
63990
ENSAPLT00000026115
105952076 - 106043456
91381