Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105978683 - 105980778

Intron Length:

2096

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCACCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCAAAT

U12 Branch Point Sequence:

TTTTTTTCCACC

Flanking Amino Acid:

NFYIKIRPGEFEQFESTIGF

Intron Amino Acid Position:

361

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

81.4

32.1

Major BPS

68.5

0.46

73.3

28.9

Major PPT

76.9

0.61

0.8

34.9

Minor 5ss

32.5

-2

3.1

40.7

45.3

Minor BPS

0.14

73.67

37.7

Associated Gene:

Gene:

EPB41L3

Ensembl Gene ID:

ENSAPLG00000012505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020980

105952076 - 106043456

91381

ENSAPLT00000026115

105952076 - 106043456

91381

ENSAPLT00000035631

105952076 - 106016065

63990

ENSAPLT00000013080

105952076 - 106016065

63990

ENSAPLT00000023647

105952076 - 106083776

131701

ENSAPLT00000032749

105952076 - 106042563

90488

ENSAPLT00000021933

105952076 - 106043456

91381

ENSAPLT00000032459

105952076 - 106043456

91381

ENSAPLT00000021826

105952076 - 106043456

91381

ENSAPLT00000027803

105952076 - 106043456

91381

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105978683_105980778_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: