Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105986224 - 105989883

Intron Length:

3660

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAG

U12 Branch Point Sequence:

CTTTCAGTAAAC

Flanking Amino Acid:

PAKEIKKQIRSGAWQFAFNV

Intron Amino Acid Position:

182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

81.6

33.2

Major BPS

63.7

0.34

1.6

39.9

Major PPT

85.7

0.8

77.4

36.9

Minor 5ss

45.5

-0.5

2.8

58.6

40.2

Minor BPS

48.9

-0.1

2.3

68.75

42.5

Associated Gene:

Gene:

EPB41L3

Ensembl Gene ID:

ENSAPLG00000012505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020980

105952076 - 106043456

91381

ENSAPLT00000026115

105952076 - 106043456

91381

ENSAPLT00000035631

105952076 - 106016065

63990

ENSAPLT00000013080

105952076 - 106016065

63990

ENSAPLT00000023647

105952076 - 106083776

131701

ENSAPLT00000032749

105952076 - 106042563

90488

ENSAPLT00000021933

105952076 - 106043456

91381

ENSAPLT00000032459

105952076 - 106043456

91381

ENSAPLT00000021826

105952076 - 106043456

91381

ENSAPLT00000027803

105952076 - 106043456

91381

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105986224_105989883_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: