Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

106011251 - 106015856

Intron Length:

4606

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGAG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

TCTAACTTAATT

Flanking Amino Acid:

AHSTPVKKEQATDKEQEFAA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

38.2

Major BPS

78.2

0.7

77.9

32.1

Major PPT

91.8

0.94

0.6

84.7

30.2

Minor 5ss

28.6

-2.5

3.5

36.8

47.7

Minor BPS

0.68

1.5

81.74

39.8

Associated Gene:

Gene:

EPB41L3

Ensembl Gene ID:

ENSAPLG00000012505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032749

105952076 - 106042563

90488

ENSAPLT00000013080

105952076 - 106016065

63990

ENSAPLT00000023647

105952076 - 106083776

131701

ENSAPLT00000032459

105952076 - 106043456

91381

ENSAPLT00000021933

105952076 - 106043456

91381

ENSAPLT00000021826

105952076 - 106043456

91381

ENSAPLT00000027803

105952076 - 106043456

91381

ENSAPLT00000035631

105952076 - 106016065

63990

ENSAPLT00000020980

105952076 - 106043456

91381

ENSAPLT00000026115

105952076 - 106043456

91381

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106011251_106015856_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: