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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106148350_106152359_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106148350 - 106152359
Intron Length:
4010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TACTGCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
GTTTACTGCATT
Flanking Amino Acid:
FVSIPITDDQILDRIEDVQE
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
73.7
0.53
0.9
66.4
39.1
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
49.3
0.03
2.1
74.83
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042031
106147210 - 106165246
18037