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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106155385_106159652_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106155385 - 106159652
Intron Length:
4268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATCCCTTATTT
Flanking Amino Acid:
ENQKMLSRIAKAVEECFNEM
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.6
0.53
1
66.5
43.5
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
68.9
0.67
1.6
82.93
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042031
106147210 - 106165246
18037