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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106179723_106179770_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
106179723 - 106179770
Intron Length:
48

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCTGGAGGA
5'SS Class:
weak_major
3'SS Sequence:
AAACGAAACAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GGCATCTAAACG
Flanking Amino Acid:
FMISRSHAALGRTPCNPPHL
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.4
51.6
42
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
40.1
-0.5
1.6
29.3
34.2
Minor 5ss
14
-4.2
3.5
12.8
28.3
Minor BPS
47.8
-0.3
1.8
49.02
44.4

Associated Gene:

Gene:
TMEM200C
Ensembl Gene ID:
ENSAPLG00000027090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032399
106179620 - 106181384
1765