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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106192599_106198252_R

Intron Information:

Intron Rank:
134671
Intron Class:
major
Intron Phase:
Intron Coordinates:
106192599 - 106198252
Intron Length:
5654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGGAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
64.3
0.32
1.1
59.2
44.9
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019765
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033304
106189668 - 106198684
9017