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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106252429_106257405_F

Intron Information:

Intron Rank:
140316
Intron Class:
major
Intron Phase:
Intron Coordinates:
106252429 - 106257405
Intron Length:
4977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TCTTTCTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
76.9
0.6
1
77.9
28.4
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
71.6
0.54
1.5
72.05
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025034
106223380 - 106257843
34464