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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106375178_106414648_R

Intron Information:

Intron Rank:
135645
Intron Class:
major
Intron Phase:
Intron Coordinates:
106375178 - 106414648
Intron Length:
39471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTAATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATATTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.5
0.66
0.9
70.1
44.8
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
66.6
0.6
1.5
80.24
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020385
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042594
106367173 - 106414744
47572