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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106416932_106419142_F

Intron Information:

Intron Rank:
142370
Intron Class:
major
Intron Phase:
Intron Coordinates:
106416932 - 106419142
Intron Length:
2211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TCCTCCTCATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
85.4
31.7
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
70.8
0.47
0.8
70.7
28.8
Minor 5ss
37.6
-1.4
3.6
57.9
46.7
Minor BPS
52.3
0.07
1.8
63.02
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026675
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023449
106416826 - 106419843
3018